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The complete sequence and comparative analysis of ape sex chromosomes

Apes possess two sex chromosomes—the male-specific Y chromosome and the X chromosome, which is present in both males and females. The Y chromosome is crucial for male reproduction, with deletions being linked to infertility1. The X chromosome is vital for reproduction and cognition2. Variation in mating patterns and brain function among apes suggests corresponding differences in their sex chromosomes. However, owing to their repetitive nature and incomplete reference assemblies, ape sex chromosomes have been challenging to study. Here, using the methodology developed for the telomere-to-telomere (T2T) human genome, we produced gapless assemblies of the X and Y chromosomes for five great apes (bonobo (Pan paniscus), chimpanzee (Pan troglodytes), western lowland gorilla (Gorilla gorilla gorilla), Bornean orangutan (Pongo pygmaeus) and Sumatran orangutan (Pongo abelii)) and a lesser ape (the siamang gibbon (Symphalangus syndactylus)), and untangled the intricacies of their ....

United States , Wilson Sayres , Iturralde Martinez , Hylobates Symphalangus , Mc Cartney , Mpa Assembly , Repbase Update , Cell Genet , Integrative Genomics , Cancer Res , Improved Pairwise Alignment , Penn State , Acids Res , Annotation Toolkit , Cell Biol , Kosakovsky Pond , Genome Analysis Toolkit ,

Transcriptional control of the Cryptosporidium life cycle

The parasite Cryptosporidium is a leading agent of diarrhoeal disease in young children, and a cause and consequence of chronic malnutrition1,2. There are no vaccines and only limited treatment options3. The parasite infects enterocytes, in which it engages in asexual and sexual replication4, both of which are essential to continued infection and transmission. However, their molecular mechanisms remain largely unclear5. Here we use single-cell RNA sequencing to reveal the gene expression programme of the entire Cryptosporidium parvum life cycle in culture and in infected animals. Diverging from the prevailing model6, we find support for only three intracellular stages: asexual type-I meronts, male gamonts and female gametes. We reveal a highly organized program for the assembly of components at each stage. Dissecting the underlying regulatory network, we identify the transcription factor Myb-M as the earliest determinant of male fate, in an organism that lacks genetic sex dete ....

United States , Chlamydomonas Reinhardtii , Muris Gen , Global Enteric Multicenter Study , Wkly Rep , Cell Host Microbe , Host Microbe , Cryptosporidium Muris , Plant Biol , Trends Plant Sci , Acids Res ,

The rise of baobab trees in Madagascar

The rise of baobab trees in Madagascar
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New South Wales , Adansonia Bombacaceae , Bombacoideae Malvaceae , China National Center , National Genomics Data Center , Broad Institute , Plant Biol , Genomes Genet , East Africa , Laurentide Ice Sheet , Marine Isotope Stage , Southwest Greenland , West African , New Natural History , Acids Res , Genomics Genet , From Fastq , Plant Divers , Genome Sequence Archive ,

Decoding the interplay between genetic and non-genetic drivers of metastasis

Decoding the interplay between genetic and non-genetic drivers of metastasis
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Al Bakir , Malagoli Tagliazucchi , Vander Velde , Sousae Melo , Us National Library Of Medicine , Transcriptome Core Group , Cancer Analysis Of Whole Genomes Consortium , Core Group , Cancer Analysis , Whole Genomes , Stem Cell , Cancer Genome Atlas , Cell Biol , Metastasis Rev , Cancer Res , Big Bang , Posthumous Evaluation , Advanced Cancer Environment , Acids Res ,

Structural basis of lipid head group entry to the Kennedy pathway by FLVCR1

Phosphatidylcholine and phosphatidylethanolamine, the two most abundant phospholipids in mammalian cells, are synthesized de novo by the Kennedy pathway from choline and ethanolamine, respectively1–6. Despite the essential roles of these lipids, the mechanisms that enable the cellular uptake of choline and ethanolamine remain unknown. Here we show that the protein encoded by FLVCR1, whose mutation leads to the neurodegenerative syndrome posterior column ataxia and retinitis pigmentosa7–9, transports extracellular choline and ethanolamine into cells for phosphorylation by downstream kinases to initiate the Kennedy pathway. Structures of FLVCR1 in the presence of choline and ethanolamine reveal that both metabolites bind to a common binding site comprising aromatic and polar residues. Despite binding to a common site, FLVCR1 interacts in different ways with the larger quaternary amine of choline in and with the primary amine of ethanolamine. Structure-guided mutagenesis ident ....

Clustal Omega , Acta Crystallogr , Send Energy , Aspects Med , Lipid Res , Acids Res , Cell Biol , Acta Lipids Lipid , Resolution Revolution , Recent Advances ,