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Zymo releases VirSieve™ Open-Source Bioinformatics Pipeline

Zymo releases VirSieve™ Open-Source Bioinformatics Pipeline
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Weill Cornell study: New species are all around us

Dr. Christopher Mason/Provided
Left: Heba Shabaan, a third-year medical student at Weill Cornell Medical College and Dr. Christopher Mason prepare to swab for microbes in the NYC subway system on June 21, 2020. Right: Subway turnstile being swabbed.
Weill Cornell study: New species are all around us
May 27, 2021
About 12,000 bacteria and viruses collected in a sampling from public transit systems and hospitals around the world from 2015 to 2017 had never before been identified, according to a study by the International MetaSUB Consortium, a global effort at tracking microbes that is led by Weill Cornell Medicine investigators.
For the study, published May 26 in Cell, international investigators collected nearly 5,000 samples over a three-year period across 60 cities in 32 countries and six continents. The investigators analyzed the samples using a genomic sequencing technique called shotgun sequencing to detect the presence of various microbes, inc ....

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Global study finds each city has unique microbiome fingerprint of bacteria

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Each city has its own unique microbiome, a fingerprint of viruses and bacteria that uniquely identify it, according to a new study from an international consortium of researchers that included a team from the University of Maryland School of Medicine (UMSOM). The international project, which sequenced and analyzed samples collected from public transit systems and hospitals in 60 cities around the world, was published today in the journal
Cell.
The research is considered to be the largest-ever global metagenomic study of urban microbiomes, spanning both the air and the surfaces of multiple cities. It features a comprehensive analysis for all the microbial species identified including thousands of viruses and bacteria and two newly identified single-cell organisms not found in reference databases. ....

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Global microbiome study discovers thousands of new species, maps urban antimicrobial resistance and reveals new drug candidates

About 12,000 bacteria and viruses collected in a sampling from public transit systems and hospitals around the world from 2015 to 2017 had never before been identified, according to a study by the International MetaSUB Consortium, a global effort at tracking microbes that is led by Weill Cornell Medicine investigators. ....

New York , United States , Rio De Janeiro , Estado Do Rio , Daniela Bezdan , Andre Kahles , Jeff Zhu , Christopher Mason , David Danko , Shawn Levy , Klas Udekwu , Evan Afshin , York Genome Center , Weill Cornell Graduate School , Stockholm University , International Metasub Consortium , Onegevity Health , Hudsonalpha Institute For Biotechnology , Pittsburgh Supercomputing Center , Macaulay Honors College At Queens , Translational Science Center , Worldquant Initiative For Quantitative Prediction , National Wastewater Surveillance System , Zymo Research , Weill Cornell Medicine , Worldquant Initiative ,

Researchers use genomic sequencing technique to detect presence of various microbes

Researchers use genomic sequencing technique to detect presence of various microbes
About 12,000 bacteria and viruses collected in a sampling from public transit systems and hospitals around the world from 2015 to 2017 had never before been identified, according to a study by the International MetaSUB Consortium, a global effort at tracking microbes that is led by Weill Cornell Medicine investigators.
For the study, published May 26 in
Cell, international investigators collected nearly 5,000 samples over a three-year period across 60 cities in 32 countries and six continents. The investigators analyzed the samples using a genomic sequencing technique called shotgun sequencing to detect the presence of various microbes, including bacteria, archaea (single-celled organisms that are distinct from bacteria), and viruses that use DNA as their genetic material. (Other types of viruses that use RNA as their genetic material, such as SARS-CoV-2, the virus that causes COVID-19 ....

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