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Research On Gene Expressing Proteome Shows a Responsive Mode of Communication Housed in DNA

Prof. Franklin Pugh, Chitvan Mittal grad, Olivia Lang grad, and William K.M. Lai grad highlights new understandings of how the epigenome impacts transcription within cells. ....

Chitvan Mittal , Williamkm Lai , Franklin Pugh , Olivia Lang , Assembly Pathway Selective , Pathway Selective For Poised , Onstitutive Systems , Ene Expression ,

The 3Rs of the genome: Reading, writing, and regulating


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IMAGE: Researchers have precisely mapped the binding locations of over 400 proteins on the yeast genome using ChIP-exo. The method (top) uses an antibody to fish out a specific DNA-bound protein.
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Credit: Pugh Lab, Cornell and Mahony Lab, Penn State
A massive effort to map the precise binding locations of over 400 different kinds of proteins on the yeast genome has produced the most thorough and high-resolution map of chromosome architecture and gene regulation to date. The study reveals two distinct gene regulatory architectures, expanding the traditional model of gene regulation. So-called constitutive genes, those that perform basic housekeeping functions and are nearly always active at low levels require only a basic set of regulatory controls; whereas those that that are activated by environmental signals, known as inducible genes, have a more specialized architecture. This finding in yeast could open the door to a better unders ....

Prashantk Kuntala , Nitika Badjatia , Ninap Farrell , Katelyns Mistretta , Joshuad Mairose , Matthewj Rossi , Grettad Kellogg , Kylie Bocklund , Thomasr Blanda , Naomi Yamada , Emilys Perkinson , Chitvan Mittal , Shaun Mahony , Davidj Rocco , Williamkm Lai , B Franklin Pugh , Penn State Institute For Computational , Us National Institutes Of Health , Data Sciences , Cornell University , Us National Science Foundation , Penn State , Guray Kuzu , Science Foundation , Penn State Institute , Advanced Cyberinfrastructure ,