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Frontiers | Genome-Wide Association Analysis Reveals Genetic Loci and Candidate Genes for Chest, Abdominal, and Waist Circumferences in Two Duroc Pig Populations

Chest circumference (CC), abdominal circumference (AC), and waist circumference (WC) are regarded as important indicators for improving economic traits because they can reflect the growth and physiological status in pigs. However, the genetic architecture of CC, AC, and WC is still elusive. Here, we performed single-trait and multi-trait genome-wide association studies (GWASs) for CC, AC, and WC in 2206 American origin Duroc (AOD) and 2082 Canadian origin Duroc (COD) pigs. As a result, one novel quantitative trait locus (QTL) on Sus scrofa chromosome (SSC) 1 was associated with CC and AC in COD pigs, which spans 6.92 Mb (from 170.06 to 176.98 Mb). Moreover, multi-trait GWAS identified 21 significant SNPs associated with the three conformation traits, indicating the multi-trait GWAS is a powerful statistical approach that uncovers pleiotropic locus. Finally, the three candidate genes (ITGA11, TLE3, and GALC) were selected that may play a role in the conformation traits. Further bioinfor ....

Baden Wüberg , United States , New York , Nat Genet , Coheni Pearson , J Clin Nutr , Guangdong Wens Foodstuff Group Co Ltd , Trop Anim Health , Guangdong Wens Breeding Swine Technology Co Ltd , Committee Of The South China Agricultural University , Wens Foodstuffs Group Co Ltd , Life Sciences , Entrepreneurial Research Team Program , R Foundation For Statistical Computing , Geneseek Porcine , Hardy Weinbergp Value , Supplementary Table , Block Analysis , Genetic Parameters , Explained Phenotypic , Explained Phenotypic Variance , Kyoto Encyclopedia , Gene Ontology , Correlation Among , Supplementary Figure , White Duroc ,