You Can Now Pay Your Muni and BART Fares By Waving Your Apple Watch or iPhone Over a Clipper Reader At last, a couple years behind other cities, San Francisco now has added Apple Wallet and Apple Watch paying capability on mass transit, with Android capability on the way soon. As SFist reported in February, the Metropolitan Transportation Commission (MTC) and the intramodal Clipper Card finally got around to adding mobile payments during the pandemic. Now, as of Thursday, riders on BART and Muni can just wave their iPhone or Apple Watch over a Clipper reader to pay fares on trains and buses. Clipper Cards can be added to the Apple Wallet, and be managed using a new Clipper Card app.