Hanover Crossing replaces the Hanover Mall, which was demolished this year.
The permitting fees in Hanover are tied to the cost of construction. The Market Basket store is estimated to cost $14.4 million, which means it paid the town $144,000 for the building permit. The much smaller Chipotle is estimated to cost $1 million, for a building permit cost of $10,000.
Market Basket representatives have not returned requests for comment.
Town meeting voters rejected a citizens petition for a liquor license at Market Basket after liquor store owners complained about possible competition.
The supermarket will sit roughly where the Walmart store was in the Hanover Mall, although farther back to provide for more parking, Hanover Mall General Manager Ed Callahan previously said.