The prayers will focus on peace during elections, but cautioned against having prayers while complaining.
This comes after the Church of Uganda failed to participate in the recent three day National prayers organized by Joint Christian Council.
He meanwhile also admitted to some disagreements within the Uganda Joint Christian Council.
He however stressed that these differences are not as big as they are being made to look and they are being ironed out within the organisation.
The archbishop has also asked Ugandans to actively turn up for voting.